Patterned progression of bacterial populations in the premature infant gut
…, HJ Stevens, WE Bennett Jr, N Shaikh… - Proceedings of the …, 2014 - National Acad Sciences
In the weeks after birth, the gut acquires a nascent microbiome, and starts its transition to
bacterial population equilibrium. This early-in-life microbial population quite likely influences …
bacterial population equilibrium. This early-in-life microbial population quite likely influences …
Development of an enhanced human gastrointestinal epithelial culture system to facilitate patient-based assays
KL VanDussen, JM Marinshaw, N Shaikh, H Miyoshi… - Gut, 2015 - gut.bmj.com
Objective The technology for the growth of human intestinal epithelial cells is rapidly
progressing. An exciting possibility is that this system could serve as a platform for individualised …
progressing. An exciting possibility is that this system could serve as a platform for individualised …
Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study
…, C Hall-Moore, GM Weinstock, E Sodergren, N Shaikh… - The Lancet, 2016 - thelancet.com
Background Gut bacteria might predispose to or protect from necrotising enterocolitis, a severe
illness linked to prematurity. In this observational prospective study we aimed to assess …
illness linked to prematurity. In this observational prospective study we aimed to assess …
Escherichia coli O157:H7 Shiga Toxin-Encoding Bacteriophages: Integrations, Excisions, Truncations, and Evolutionary Implications
N Shaikh, PI Tarr - Journal of bacteriology, 2003 - Am Soc Microbiol
As it descended from Escherichia coli O55:H7, Shiga toxin (Stx)-producing E. coli (STEC)
O157:H7 is believed to have acquired, in sequence, a bacteriophage encoding Stx2 and …
O157:H7 is believed to have acquired, in sequence, a bacteriophage encoding Stx2 and …
Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections
…, C Hall-Moore, S Julian, N Shaikh… - Clinical Infectious …, 2014 - academic.oup.com
Bacteria that cause late-onset neonatal sepsis often reside in the infant gut before they invade
the bloodstream. They are rarely found in infants without sepsis. Screening, augmented …
the bloodstream. They are rarely found in infants without sepsis. Screening, augmented …
Diarrhea etiology in a pediatric emergency department: a case control study
DM Denno, N Shaikh, JR Stapp, X Qin… - Clinical infectious …, 2012 - academic.oup.com
Background . The etiology of childhood diarrhea is frequently unknown. Methods . We
sought Aeromonas, Campylobacter, Escherichia coli O157:H7, Pleisiomonas shigelloides, …
sought Aeromonas, Campylobacter, Escherichia coli O157:H7, Pleisiomonas shigelloides, …
The IrgA Homologue Adhesin Iha Is an Escherichia coli Virulence Factor in Murine Urinary Tract Infection
…, LM Schoening, C Clabots, N Shaikh… - Infection and …, 2005 - Am Soc Microbiol
The role of the Escherichia coli iron-regulated gene homologue adhesin (Iha) in the pathogenesis
of urinary tract infections (UTIs) is unknown. We performed a series of complementary …
of urinary tract infections (UTIs) is unknown. We performed a series of complementary …
Epithelial indoleamine 2, 3-dioxygenase 1 modulates aryl hydrocarbon receptor and notch signaling to increase differentiation of secretory cells and alter mucus …
…, M Iticovici, AI Thaker, N Dai, KL VanDussen, N Shaikh… - Gastroenterology, 2019 - Elsevier
Background & Aims Inflammation, injury, and infection up-regulate expression of the tryptophan
metabolizing enzyme indoleamine 2,3-dioxygenase 1 (IDO1) in the intestinal epithelium. …
metabolizing enzyme indoleamine 2,3-dioxygenase 1 (IDO1) in the intestinal epithelium. …
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
…, V Magrini, NJ Holt, N Shaikh… - Proceedings of the …, 2009 - National Acad Sciences
Single nucleotide polymorphisms (SNPs) in stable genome regions provide durable
measurements of species evolution. We systematically identified each SNP in concatenations of all …
measurements of species evolution. We systematically identified each SNP in concatenations of all …
Greater Diversity of Shiga Toxin-Encoding Bacteriophage Insertion Sites among Escherichia coli O157:H7 Isolates from Cattle than in Those from Humans
Escherichia coli O157:H7, a zoonotic human pathogen for which domestic cattle are a
reservoir host, produces a Shiga toxin(s) (Stx) encoded by bacteriophages. Chromosomal …
reservoir host, produces a Shiga toxin(s) (Stx) encoded by bacteriophages. Chromosomal …