Results of TDT analysis for SNP in family trios of set 1.
| SNP | Gene | TDT p value | Allele | Transmission Ratio |
|---|---|---|---|---|
| All family trios | ||||
| rs3092936 | CD40LG | 0.595 | C | 9:6 |
| rs311071 | CD99 | 0.569 | T | 41:36 |
| rs312258 | CD99 | 0.092 | G | 47:32 |
| rs16997659 | EIF2S3 | 0.819 | C | 10:9 |
| rs12556742 | EIF2S3 | 0.731 | G | 18:16 |
| rs12847067 | EIF2S3 | 0.739 | G | 19:17 |
| rs3093457 | IL9R | 0.087 | C | 46:31 |
| rs1973881 | IL9R | 0.887 | G | 25:24 |
| rs4239963 | UBA1 | 0.048 | G | 21:10 |
| rs11558783 | UBA1 | 0.513 | G | 12:9 |
| rs4529579 | UBA1 | 0.435 | T | 23:18 |
| rs6520277 | TIMP1 | 0.307 | T | 27:20 |
| rs6520278 | TIMP1 | 0.025 | C | 30:15 |
| rs5953060 | TIMP1 | 0.228 | C | 26:18 |
| rs7878958 | XIAP | 0.758 | C | 22:20 |
| rs7053190 | XIAP | 0.578 | T | 16:13 |
| rs9856 | XIAP | 0.773 | G | 25:23 |
| Family trios with male offspring | ||||
| rs3092936 | CD40LG | 1 | — | 0:0 |
| rs311071 | CD99 | 0.166 | T | 9:4 |
| rs312258 | CD99 | 0.206 | G | 7:3 |
| rs16997659 | EIF2S3 | 1 | — | 1:1 |
| rs12556742 | EIF2S3 | 0.564 | G | 2:1 |
| rs12847067 | EIF2S3 | 0.564 | G | 2:1 |
| rs3093457 | IL9R | 0.011 | C | 9:1 |
| rs1973881 | IL9R | 0.248 | A | 4:2 |
| rs4239963 | UBA1 | 0.564 | G | 2:1 |
| rs11558783 | UBA1 | 0.564 | G | 2:1 |
| rs4529579 | UBA1 | 0.655 | C | 3:2 |
| rs6520277 | TIMP1 | 0.014 | T | 6:0 |
| rs6520278 | TIMP1 | 0.008 | C | 7:0 |
| rs5953060 | TIMP1 | 0.103 | C | 5:1 |
| rs7878958 | XIAP | 0.655 | C | 3:2 |
| rs7053190 | XIAP | 0.655 | T | 3:2 |
| rs9856 | XIAP | 1 | — | 2:2 |
| Family trios with female offspring | ||||
| rs3092936 | CD40LG | 0.595 | C | 9:6 |
| rs311071 | CD99 | 1 > 0.1 | — | 32:32 |
| rs312258 | CD99 | 0.232 | G | 40:30 |
| rs16997659 | EIF2S3 | 0.808 | C | 9:8 |
| rs12556742 | EIF2S3 | 0.857 | G | 16:15 |
| rs12847067 | EIF2S3 | 0.862 | G | 17:16 |
| rs3093457 | IL9R | 0.232 | C | 40:30 |
| rs1973881 | IL9R | 0.647 | G | 23:20 |
| rs4239963 | UBA1 | 0.059 | G | 19:9 |
| rs11558783 | UBA1 | 0.637 | G | 10:8 |
| rs4529579 | UBA1 | 0.250 | T | 22:15 |
| rs6520277 | TIMP1 | 0.758 | T | 22:20 |
| rs6520278 | TIMP1 | 0.194 | C | 23:15 |
| rs5953060 | TIMP1 | 0.631 | C | 21:17 |
| rs7878958 | XIAP | 0.746 | C | 20:18 |
| rs7053190 | XIAP | 0.683 | T | 13:11 |
| rs9856 | XIAP | 0.763 | G | 23:21 |