Abstract
Objective We aimed to determine the frequency and types of infections in hospitalized children with childhood-onset systemic lupus erythematosus (cSLE), and to identify risk factors for intensive care unit (ICU) admission and mortality.
Methods We conducted a retrospective study of youth aged 2 to 21 years using International Classification of Diseases (ICD) codes for SLE assigned during admission to a hospital participating in the Pediatric Health Information System, a database of United States children’s hospitals, from 2009 to 2021. Generalized linear mixed effects models were used to identify risk factors for ICU admission and mortality among children hospitalized with infection.
Results We identified 8588 children with cSLE and ≥ 1 hospitalization. Among this cohort, there were 26,269 hospitalizations, of which 13% had codes for infections, a proportion that increased over time (P = 0.04). Bacterial pneumonia was the most common hospitalized infection. In-hospital mortality occurred in 0.4% (n = 103) of cSLE hospitalizations for any indication and 2% of hospitalizations for infection (n = 60). The highest mortality rates occurred with Pneumocystis jirovecii pneumonia (21%) and other fungal infections (21%). Lupus nephritis (LN) and endstage renal disease (ESRD) were associated with increased odds of ICU admission (odds ratio [OR] 1.47 [95% CI 1.2-1.8] and OR 2.40 [95% CI 1.7-3.4]) among children admitted for serious infection. ESRD was associated with higher mortality (OR 2.34 [95% CI 1.1-4.9]).
Conclusion Hospitalizations with ICD codes for infection comprised a small proportion of cSLE admissions but accounted for the majority of mortality. The proportion of hospitalizations for infection increased over time. LN and ESRD were risk factors for poor outcomes.
- childhood-onset systemic lupus erythematosus
- infection
- mortality
- pediatric rheumatic diseases
- systemic lupus erythematosus
Little is known about infection rates and outcomes among children with childhood-onset systemic lupus erythematosus (cSLE), though adults with SLE have been shown to be at high risk of infection due to SLE-associated immune abnormalities and immunosuppressive treatments.1-3 Children with cSLE tend to have more severe disease and greater use of immunomodulatory medications than adults, including higher glucocorticoid dosing, which may predispose them to serious infections.4-7 One prior study showed high rates of serious infections in cSLE and associations with immunosuppressant use.8 Since that study, there have been several important developments in childhood preventive care and SLE care. The introduction of pneumococcal vaccination has led to significantly lower rates of invasive pneumococcal disease in children,9,10 and there is increasing attention to the infectious complications and other side effects of high-dose corticosteroid use and interest in steroid-sparing regimens. However, newly introduced targeted immunomodulators to treat SLE, including B cell–depleting biologics, may be associated with increased risk of serious infection.11-13
Therefore, the current rate and outcomes of infections in youth with cSLE are not well understood. Using the Pediatric Health Information System (PHIS) database, we conducted a retrospective study to determine the burden of infections in a large, contemporary, multicenter cohort of children with cSLE. The objectives of this study were to determine the frequency and types of infections in hospitalized children with cSLE, to assess trends in hospitalization for infection over time, and to identify risk factors for poor outcomes among children with cSLE hospitalized with infection.
METHODS
Data source and cohort selection. The PHIS is an administrative database with data contributed by over 50 freestanding children’s hospitals in the United States. In addition to site of care, payor information, and demographics, the database contains detailed hospitalization information including discharge diagnosis codes, procedure and nursing charge codes, and medications administered. A permanent identifier is assigned to each patient and can be used to track repeated hospitalizations over time, including at different PHIS-participating hospitals. We included all children and youth aged 2 to 21 years with an International Classification of Disease, 9th (ICD-9) or 10th revision (ICD-10) code for SLE during admission to a hospital participating in PHIS from 2009 through 2021. The ICD-9 code for SLE (710.0) has previously been validated in children and adolescents using PHIS.14 ICD-10 codes for SLE (codes starting with M32) were validated by chart review of PHIS participants from our single center to confirm physician diagnosis of SLE. Physician diagnosis of SLE was confirmed in 99% of those hospitalized with an M32* code and aged > 2 years at admission at our center (178/179 charts reviewed). This study was approved by the Seattle Children’s Hospital Institutional Review Board (protocol #00003955) and PHIS data use was approved by the Children’s Hospital Association.
Outcome measures. Infection outcomes were identified using ICD-9 and ICD-10 codes at discharge and antimicrobial medication use during hospitalization. A list of potentially serious infections was generated from literature review, clinical expertise regarding infection in children with cSLE, and identification of equivalent ICD-10 codes from previously published ICD code compilations. Infection codes that were determined to be unlikely to represent serious active infection (eg, symptoms associated with cSLE itself, such as pyuria or fever without a known etiology, postinfectious complications such as postherpetic neuralgia, or infections typically not serious enough to warrant hospitalization such as paronychia) were removed to generate the finalized list of qualifying serious infections (Supplementary Table S1, available with the online version of this article). The PHIS dataset includes a pharmacy flag for antiinfective medication use, which includes any hospital-administered antibiotic, antifungal, or antiviral drug. We evaluated the performance of the antiinfective medication use flags compared to lists of drugs most commonly used for specific types of bacterial, fungal, and viral infections generated from clinical experience and literature review (Supplementary Table S1). Because many viral diagnoses were not consistently treated with antiviral medications (Supplementary Table S2), we defined infection by ICD-9 or ICD-10 diagnosis code alone for viral infections. For all bacterial infections, in addition to ICD-9 or ICD-10 codes, we required documentation of antimicrobial medication, as defined by the antiinfective medication use flag provided by PHIS. Intensive care unit (ICU) admission was defined by a PHIS ICU flag derived from clinical transaction classification codes for intensive care.
Statistical analysis. Summary statistics were used to describe demographic and disease features for the entire PHIS cSLE cohort, and for the subset of this cohort with ≥ 1 hospitalization with serious infection. We calculated the frequency of inpatient admission, ICU admission, and in-hospital mortality by type of infection and assessed total hospitalizations and hospitalizations with serious infection by year. Linear regression modeling was used to compare proportion of hospitalizations for infection out of total hospitalizations among children with cSLE over time as well as in-hospital deaths from infection over time. Generalized linear mixed effects models with random effects for PHIS hospital and child or adolescent were used to identify risk factors for ICU admission and in-hospital mortality among children and adolescents hospitalized with infection. Covariates for the ICU admission and in-hospital mortality models included age at admission, lupus nephritis (LN), endstage renal disease (ESRD), sex, insurance type, and race and ethnicity. LN and ESRD were defined by ICD-9 and ICD-10 codes occurring either during the same admission as the qualifying infection or a prior admission (Supplementary Table S3, available with the online version of this article). Household income was excluded from the final models due to collinearity with insurance type. Race and ethnicity was categorized according to PHIS mutually exclusive categories (Asian, Hispanic, multiracial, non-Hispanic Black, non-Hispanic White, other, or unknown) based on race and ethnicity data submitted by each participating hospital. Each race and ethnicity category was compared to the weighted mean across all race and ethnicity categories using weighted effect coding. All analyses were conducted using R version 4.1.3 (R Foundation for Statistical Computing).
RESULTS
PHIS cSLE hospitalizations. We identified 8588 unique children and youth with cSLE and ≥ 1 hospitalization recorded in PHIS between 2009 and 2021. Among this cohort, there were 26,269 total hospitalizations, of which 3404 hospitalizations (13%) had codes for ≥ 1 serious infection, representing 2160 unique children with cSLE with ≥ 1 inpatient encounter for a serious infection. Youth with cSLE who were hospitalized with serious infections were similar in demographic and disease characteristics to the youth with cSLE hospitalized for any cause at PHIS hospitals during the study period; however, youth who were Black or Hispanic and publicly insured children represented a slightly higher proportion of both total and infection-related hospitalizations relative to the proportion of individual patients belonging to these demographic groups (Table 1). Of those admitted with an infection, the median (IQR) age was 16 (14-18) years, 84% were female, 36% were non-Hispanic Black, 32% were Hispanic, 18% were non-Hispanic White, 5% were Asian, and 65% were publicly insured.
Characteristics of children with cSLE hospitalized for any indication and with infection (2009-2021).
Infections and mortality over time. We assessed the number and proportion of hospitalizations for infection over time from 2009 through 2021. We observed a trend toward a higher proportion of hospitalizations with codes for infection over time (P = 0.04 for per-year increase in percentage of serious infections; Figure 1). Mortality rates for those hospitalized with infection did not change significantly over time (P = 0.18 for per-year change in percentage of serious infections; Figure 2).
Hospitalizations for infection, 2009-2021. Top panel: Total cSLE admissions per year (gray) compared to total infections per year (blue). Bottom panel: Percent infections per year (black) vs fitted percent infections based on linear regression (blue). Regression model P = 0.04 for per year increase in percentage infections. cSLE: childhood-onset systemic lupus erythematosus.
In-hospital mortality from infection, 2009-2021. Top panel: Total patients with cSLE hospitalized per year (gray) compared to in-hospital deaths per year (blue). Bottom panel: Percent mortality per year (black) vs fitted percent mortality based on linear regression model (blue). Regression model P = 0.18 for per year change in percentage in-hospital mortality. cSLE: childhood-onset systemic lupus erythematosus.
Types of infection and mortality. Specific types of infections and hospitalization outcomes for each infection are reported in Table 2. The most common infections observed in our cohort were bacterial pneumonia (31%), sepsis (18%), cellulitis (18%), and urinary tract infections (14%). Bacterial pneumonia was a major contributor to both total hospitalizations and ICU-level care. Sepsis was present in 45% of ICU admissions with any infection. The most common viral infections in our cohort included herpes simplex, influenza, herpes zoster, cytomegalovirus, and SARS-CoV-2. Frequently identified fungal infections included systemic candidiasis and aspergillosis.
Hospitalization outcome by type of infection and disease characteristics.
Multiple infections were more common in hospitalizations that ended in ICU admission or in-hospital mortality. We identified multiple infection codes in 11% of hospitalizations that included only non-ICU level of care, 34% of hospitalizations including ICU admission, and 55% of admissions ending in death (Table 2).
Overall, 0.4% (n = 103) of all cSLE hospitalizations ended in death, compared to 2% (n = 60) of cSLE hospitalizations with ≥ 1 serious infection. The highest in-hospital mortality rates, calculated by the number of deaths per number of hospitalizations with that type of infection, occurred in hospitalizations with codes for Pneumocystis jirovecii pneumonia (PJP; 21%), aspergillosis (16%), and other fungal infections (21%). Among viral infections, the highest mortality rate was seen in adenovirus (14%). The mortality rate for those hospitalized with SARS-CoV-2 was 2%, representing 2 deaths (Table 2).
The most prevalent infection among those who died during hospitalization was sepsis, occurring in 62% of in-hospital deaths (n = 37). Systemic candidiasis occurred in 13 children (22% of deaths), whereas bacterial pneumonia was present in 12 children (20% of deaths; Table 2).
Risk factors for severe outcomes. Among children and adolescents with cSLE hospitalized with a serious infection, LN was associated with significantly increased odds of ICU admission (odds ratio [OR] 1.47, 95% CI 1.2-1.8; Figure 3; Supplementary Table S4, available with the online version of this article). ESRD was also significantly associated with ICU admission with an OR of 2.40 (95% CI 1.7-3.4). Younger children were less likely to be admitted to an ICU, and when compared to the weighted mean, non-Hispanic Black children were less likely to be admitted to an ICU, whereas those with unknown race and non-Hispanic White children were more likely to be admitted to an ICU.
Adjusted odds of ICU admission and mortality among youth with cSLE hospitalized with infection. Covariates for the ICU admission and in-hospital mortality models included age at admission, lupus nephritis, ESRD, sex, insurance type, and race/ethnicity. Note that reference level for insurance category is private insurance, and each race/ethnicity category is compared to the weighted mean across all race/ethnicity categories using weighted effect coding. cSLE: childhood-onset systemic lupus erythematosus; ESRD: endstage renal disease; ICU: intensive care unit; OR: odds ratio.
ESRD was significantly associated with in-hospital mortality (OR 2.34, 95% CI 1.1-4.9; Figure 3). Although not statistically significant, a trend toward higher odds of mortality was observed in children and adolescents with LN (OR 1.67, 95% CI 0.9-3.0) compared to those without LN. Those who were of Asian or unknown race had significantly higher odds of inpatient mortality compared to the weighted mean. No significant associations were found with type of medical insurance and odds of ICU admission or in-hospital mortality.
DISCUSSION
In our analysis of a large, multicenter national dataset of > 8000 youth with cSLE, we assessed frequency and types of infection, risk factors for ICU admission and death, and trends in infection frequency and in-hospital mortality over time. We found that hospitalizations for infection comprised an increasing proportion of total admissions among children and youth with SLE over our study period from 2009 through 2021. Although these infection-related hospitalizations still accounted for only a small proportion of total cSLE inpatient encounters, they contributed the majority of in-hospital mortality events, with over half of all total deaths occurring in hospitalizations with infection. Whereas over time, all-cause mortality rates have decreased among children and youth with cSLE,15 we found that the mortality rate attributable to infections among those hospitalized in our cohort was sustained over the study period, with an average of 2% per year. The observed mortality rate is somewhat lower than in studies of hospitalized adults with SLE, including Medicaid enrollees, with an inpatient and up-to-30-day postdischarge mortality rate of 6.9%1 and, in a Spanish national registry, an inpatient mortality rate of 5%.16 In addition, our observed mortality rate was lower than that reported in children with cSLE enrolled in Medicaid from 2000 to 2006 (4.4% mortality within 30 days of admission for infection).8 Although some of the difference may be due to changes in treatment over time, we did not see an increased risk of mortality or ICU admission among publicly insured children in our cohort. It is possible that our lower observed mortality rate compared to the prior pediatric Medicaid study reflects differences in care settings, as Medicaid enrollees in our cohort were treated at the same hospitals as those who were privately insured. Despite lower mortality rates in pediatric vs adult studies, the mortality rate differences observed between children with cSLE and adults with SLE are far less than the expected differences in overall mortality in these age groups in the general population, underscoring the disproportionate effect of infection-related death in children and youth with cSLE. Potential explanations for lack of improvement in mortality among children with cSLE and infection over time in the PHIS dataset include the fact that, despite an overall lower coronavirus disease 2019 (COVID-19) mortality rate compared to adult SLE cohorts, cases of COVID-19–related mortality obscured a general trend toward improvement in infection-related mortality over the preceding decade. It is also possible that high-dose glucocorticoid use has continued to be common in cSLE treatment, and that new targeted immunosuppressants infer additional infection risks, though we were unable to test these hypotheses directly. Alternatively, it is also possible that practice changes over time may have affected our analysis. For example, there may have been a shift to more cSLE care occurring in infusion centers and the outpatient setting in recent years, resulting in relatively fewer uncomplicated cSLE admissions.
As has been previously demonstrated in prior SLE studies among both children and adults, bacterial infections were common reasons for hospitalization and death. Despite the broad implementation of the pneumococcal conjugate vaccination since our study start,9,10 bacterial pneumonia remained a leading contributor to hospitalization and inpatient mortality in the PHIS SLE cohort, consistent with prior work in a cohort of Medicaid-enrolled children with cSLE.8 The persistence of bacterial pneumonia as a leading cause of infection and death among youth with cSLE suggests that further preventive care approaches may be important, including administration of the pneumococcal polysaccharide vaccine as recommended by the American College of Rheumatology and the American Academy of Pediatrics.17,18 We also found a relatively high frequency of viral and fungal infections, along with high mortality with fungal infections including candidiasis, aspergillosis, and PJP. The higher burden of fungal infections in our cohort compared to prior US studies may be partly due to differences in case ascertainment, as we included a comprehensive list of viral and fungal codes, although fungal infection has also been identified as a leading cause of mortality in patients with cSLE in low-resource settings.19 We also included codes for systemic candidiasis, which has been omitted in some studies due to concerns about the specificity of ICD-9 coding; however, this was the largest category of fungal infections ending in in-hospital mortality in our cohort.1,8,20
Among our cohort, PJP had the highest mortality rate of any specific type of infection (21%). Prior studies have reported highly variable rates of PJP among adults with SLE and other rheumatic diseases,21-25 including one demonstrating low rates of PJP and higher rates of drug adverse events from antibiotic prophylaxis, leading to uncertainty about the value of PJP prophylaxis.21 However, our results demonstrate that, although very rare, PJP remains an important contributor to death among children and youth with cSLE, with 5% of children who died having a PJP diagnosis. Although we were not able to assess prescription of or adherence to PJP prophylaxis in our cohort due to the lack of outpatient medication data, our findings suggest that PJP prophylaxis may be an important intervention among highly immunocompromised youth with cSLE.
We observed a markedly lower COVID-19 in-hospital mortality rate (2%) compared to studies of adults with SLE and other rheumatic diseases (≥ 20%).26-28 While prior data on COVID-19 in children and youth with cSLE are limited, the 2 previous fatalities reported in patients with cSLE diagnosed with COVID-19 in the Childhood Arthritis and Rheumatology Research Alliance and European Alliance of Associations for Rheumatology/Paediatric Rheumatology European Society cohorts were limited to those with new diagnoses of SLE at the time of COVID-19 infection29; these findings may be consistent with a substantially lower risk of mortality from COVID-19 infection alone among children and youth with cSLE compared to adult SLE. We were unable to determine COVID-19 vaccination status; however, the majority of the time frame of our study (discharges ending in 2021) preceded widespread COVID-19 vaccination among children and young adults in the US.
We observed a large number of cases of herpes zoster infection, despite excluding ICD codes for postherpetic neuralgia and other postinfectious complications. High rates of herpes zoster have previously been demonstrated in adults with SLE.23,30,31 Greater recognition of the burden of herpes zoster in children and adolescents with cSLE may have implications for preventive care, as current vaccine guidelines suggest herpes zoster vaccination only for immunocompromised adults aged ≥ 19 years.
Consistent with previous literature, we found that youth with cSLE and renal involvement were at increased risk of severe outcomes from infection, including ICU admission and death.32 Those with ESRD had increased risk of both ICU admission and death in our cohort, whereas those with LN were more likely to be admitted to an ICU. It is possible that medications used more frequently to treat LN, such as cyclophosphamide and pulse-dose glucocorticoids, may contribute to the risk of severe outcomes from infection, as these have previously been identified as risk factors.13,32 However, we were unable to assess the contribution of immunomodulatory regimens to infection outcomes directly since only inpatient medication data were available in PHIS. Dialysis itself may also contribute to infection risk, but we were unable to reliably determine outpatient peritoneal vs hemodialysis regimens given the possibility for use of different modalities in the acute care setting.
We did not observe any significant association between ICU admission or death with type of medical insurance. Compared to the weighted mean, children who were of non-Hispanic White or unknown race and ethnicity had higher rates of ICU admission, whereas non-Hispanic Black children were less likely to be admitted to an ICU. Those who were Asian or of unknown race and ethnicity also had significantly higher mortality rates in our cohort of patients with infections. These findings could represent differences in disease severity or care received, although conclusions are limited by our cohort being defined by inpatient admission, as children of different racial and ethnic groups may have had variable rates of admission for routine care such as medication infusion. As previously demonstrated in PHIS,14 we observed that youth who were publicly insured, had lower household income, or were Black or Hispanic had higher overall rates of hospitalization. Therefore, our finding of lower rates of ICU admission and in-hospital mortality in some demographic groups could also suggest that youth in these groups were more likely to be admitted for routine care. Interpretation of racial and ethnic group differences in outcomes is also limited by the number of children whose race/ethnicity was recorded as “unknown,” and inability to verify that racial and ethnic identifiers submitted by contributing PHIS hospitals accurately reflected patient self-identification.
Some of the strengths of our approach include the use of a large multicenter dataset, with > 8000 youth with cSLE identified across > 50 hospitals. We demonstrated that the ICD-10 codes for SLE have high validity for physician diagnosis of SLE in pediatric hospitals. We were also able to validate infection codes with pharmacy data, increasing the specificity of infection identification in this study.
Our approach also had several limitations, including the fact that this was a retrospective study using secondary data. As diagnoses were determined by discharge billing codes, we were unable to determine the primary reason for hospitalization and death—including among patients who had codes for multiple infections—and it is possible that noninfectious complications of SLE or other comorbidities may have also contributed to in-hospital mortality. Although this was a large and diverse national cohort, PHIS includes only freestanding children’s hospitals, and most of these participating institutions have highly specialized pediatric ICUs as well as pediatric subspecialty care including pediatric rheumatologists, pediatric nephrologists, and pediatric infectious disease doctors. Therefore, the care received and treatment outcomes may not be generalizable to cSLE more generally, especially in relation to care received in primarily adult or community hospital settings, where an unknown proportion of cSLE care is delivered, or in non-US settings. The PHIS dataset includes only emergency department and inpatient encounters, and therefore the total population of youth with SLE served by these hospitals, including those cared for only in the outpatient setting, is unknown. We were therefore unable to estimate incidence or prevalence of hospitalized infections in the cSLE population. It is possible that some patients identified in our cohort had additional hospitalized encounters in hospitals that do not participate in PHIS, which we were unable to identify. Similarly, we were unable to assess the date of first SLE diagnosis using PHIS codes, as it is possible that initial cSLE diagnosis occurred in the outpatient setting. Although we identified LN and ESRD as significant predictors of ICU admission and in-hospital mortality, we had limited data on ESRD management, including the contribution of different modalities of dialysis to infection risk. The PHIS does not contain outpatient medication prescription information, and therefore we were unable to assess outpatient oral glucocorticoid use or types of immunosuppressants used to treat cSLE as risk factors for infection or poor outcomes among those hospitalized with infection.
In conclusion, we found that infections comprised a small but increasing proportion of hospitalizations among a large national cohort of children and adolescents with cSLE. Hospitalizations with infections accounted for the majority of in-hospital mortality. Although bacterial infections remained common, mortality in patients with fungal and viral infections was also high in our cohort. Children and adolescents with LN and ESRD were at increased risk of poor outcomes. Further research is needed to estimate the incidence and prevalence of hospitalized infections using population-based pediatric SLE cohorts, and to understand modifiable risk factors for infection and associated mortality, including the contribution of immunomodulatory medications, glucocorticoid dosing, and preventive care practices like vaccination and infectious prophylaxis.
Footnotes
JER was supported by grants from the Lupus Foundation of America, the Seattle Children’s Research Institute Center for Clinical and Translational Research Clinical Research Scholars Program, and the Childhood Arthritis and Rheumatology Research Alliance-Arthritis Foundation.
The authors declare no conflicts of interest relevant to this article.
- Accepted for publication March 23, 2024.
- Copyright © 2024 by the Journal of Rheumatology









