Analyzing time series gene expression data
Z Bar-Joseph - Bioinformatics, 2004 - academic.oup.com
… can be used when the class information is not given (Bar-Joseph et al., 2003c). This results
in … the leaves of an hierarchical clustering tree was presented in Bar-Joseph et al. (2003a). By …
in … the leaves of an hierarchical clustering tree was presented in Bar-Joseph et al. (2003a). By …
The continuous challenge of citrus tristeza virus control
M Bar-Joseph, R Marcus, RF Lee - Annual review of …, 1989 - annualreviews.org
… Bar-Joseph et al (17) reported a quantitative difference in the number of particles when
comparing seedling yellows and ordinary CTV strains in Israel. Sasaki et aI (155) separated mild …
comparing seedling yellows and ordinary CTV strains in Israel. Sasaki et aI (155) separated mild …
Studying and modelling dynamic biological processes using time-series gene expression data
Biological processes are often dynamic, thus researchers must monitor their activity at multiple
time points. The most abundant source of information regarding such dynamic activity is …
time points. The most abundant source of information regarding such dynamic activity is …
Computational discovery of gene modules and regulatory networks
Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi… - Nature …, 2003 - nature.com
We describe an algorithm for discovering regulatory networks of gene modules, GRAM (Genetic
Regulatory Modules), that combines information from genome-wide location and …
Regulatory Modules), that combines information from genome-wide location and …
Transcriptional Regulatory Networks in Saccharomyces cerevisiae
We have determined how most of the transcriptional regulators encoded in the eukaryote
Saccharomyces cerevisiaeassociate with genes across the genome in living cells. Just as …
Saccharomyces cerevisiaeassociate with genes across the genome in living cells. Just as …
[HTML][HTML] STEM: a tool for the analysis of short time series gene expression data
J Ernst, Z Bar-Joseph - BMC bioinformatics, 2006 - Springer
Background Time series microarray experiments are widely used to study dynamical biological
processes. Due to the cost of microarray experiments, and also in some cases the limited …
processes. Due to the cost of microarray experiments, and also in some cases the limited …
The sirtuin SIRT6 regulates lifespan in male mice
…, G Amir, V Peshti, G Zinman, L Nahum, Z Bar-Joseph… - Nature, 2012 - nature.com
The significant increase in human lifespan during the past century confronts us with great
medical challenges. To meet these challenges, the mechanisms that determine healthy ageing …
medical challenges. To meet these challenges, the mechanisms that determine healthy ageing …
Matter-wave interferometry in a double well on an atom chip
…, LM Andersson, S Wildermuth, S Groth, I Bar-Joseph… - Nature physics, 2005 - nature.com
Matter-wave interference experiments enable us to study matter at its most basic, quantum
level and form the basis of high-precision sensors for applications such as inertial and …
level and form the basis of high-precision sensors for applications such as inertial and …
Fast optimal leaf ordering for hierarchical clustering
Z Bar-Joseph, DK Gifford, TS Jaakkola - Bioinformatics, 2001 - academic.oup.com
We present the first practical algorithm for the optimal linear leaf ordering of trees that are
generated by hierarchical clustering. Hierarchical clustering has been extensively used to …
generated by hierarchical clustering. Hierarchical clustering has been extensively used to …
[HTML][HTML] The formation of highly soluble oligomers of α-synuclein is regulated by fatty acids and enhanced in Parkinson's disease
Accumulation of misfolded proteins as insoluble aggregates occurs in several neurodegenerative
diseases. In Parkinson's disease (PD) and dementia with Lewy bodies (DLB), α-…
diseases. In Parkinson's disease (PD) and dementia with Lewy bodies (DLB), α-…