Effects of molecular crowding on the structures, interactions, and functions of nucleic acids
S Nakano, D Miyoshi, N Sugimoto - Chemical reviews, 2014 - ACS Publications
Nucleic acids are excellent at recognizing complementary sequences through the formation
of Watson− Crick base pairs. Since the base pairing enables the highly selective …
of Watson− Crick base pairs. Since the base pairing enables the highly selective …
Improved free-energy parameters for predictions of RNA duplex stability.
…, R Kierzek, JA Jaeger, N Sugimoto… - Proceedings of the …, 1986 - National Acad Sciences
Thermodynamic parameters for prediction of RNA duplex stability are reported. One parameter
for duplex initiation and 10 parameters for helix propagation are derived from enthalpy …
for duplex initiation and 10 parameters for helix propagation are derived from enthalpy …
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
N Sugimoto, S Nakano, M Katoh, A Matsumura… - Biochemistry, 1995 - ACS Publications
MATERIALS AND METHODS Materials. Sixty-eight oligoribonucleotides and 68 oli-godeoxyribonucleotides
were synthesized chemically on a solid support using phosphoramidite …
were synthesized chemically on a solid support using phosphoramidite …
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
D Miyoshi, H Karimata, N Sugimoto - Journal of the American …, 2006 - ACS Publications
The effect of molecular crowding on the structure and stability of biomolecules has become
a subject of increasing interest because it can clarify how biomolecules behave under cell-…
a subject of increasing interest because it can clarify how biomolecules behave under cell-…
Writing waveguides in glass with a femtosecond laser
KM Davis, K Miura, N Sugimoto, K Hirao - Optics letters, 1996 - opg.optica.org
With the goal of being able to create optical devices for the telecommunications industry, we
investigated the effects of 810-nm, femtosecond laser radiation on various glasses. By …
investigated the effects of 810-nm, femtosecond laser radiation on various glasses. By …
Molecular crowding effects on structure and stability of DNA
D Miyoshi, N Sugimoto - Biochimie, 2008 - Elsevier
Living cells contain a variety of biomolecules including nucleic acids, proteins,
polysaccharides, and metabolites as well as other soluble and insoluble components. These …
polysaccharides, and metabolites as well as other soluble and insoluble components. These …
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
N Sugimoto, S Nakano, M Yoneyama… - Nucleic acids …, 1996 - academic.oup.com
To improve the previous DNA/DNA nearest-neighbor parameters, thermodynamic parameters
(Δ H , Δ S and Δ G ) of 50 DNA/DNA duplexes were measured. Enthalpy change of a helix …
(Δ H , Δ S and Δ G ) of 50 DNA/DNA duplexes were measured. Enthalpy change of a helix …
Nematocidal activity of turmeric: synergistic action of curcuminoids
F Kiuchi, Y Goto, N Sugimoto, N AKAO… - Chemical and …, 1993 - jstage.jst.go.jp
A new curcuminoid, cyclocurcumin (IV), was isolated from the nematocidally active fraction of
turmeric, the rhizome of Curcuma longa, together with three known curcuminoids, curcumin …
turmeric, the rhizome of Curcuma longa, together with three known curcuminoids, curcumin …
Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH
A Rajendran, S Nakano, N Sugimoto - Chemical communications, 2010 - pubs.rsc.org
We now present the first example in which triplet repeat DNAs adopt the i-motif structure at
neutral pH by molecular crowding. Crowding stabilized the i-motif and the pKa of N3 of …
neutral pH by molecular crowding. Crowding stabilized the i-motif and the pKa of N3 of …
RNA structure prediction
DH Turner, N Sugimoto, SM Freier - Annual review of biophysics …, 1988 - annualreviews.org
In the last decade, it has become easy to sequence nucleic acids (48, 69). Where once it
was difficult to sequence a single gene, now whole genomes containing thousands of …
was difficult to sequence a single gene, now whole genomes containing thousands of …