Abstract
Objective. The etiology of knee osteoarthritis (OA), the most common form of arthritis, is complex and may differ by race or ethnicity. In recent years, genetic studies have identified many genetic variants associated with OA, but nearly all the studies were conducted in European whites and Asian Americans. Few studies have focused on the genetics of knee OA in African Americans.
Methods. We performed a genome-wide association study of radiographic knee OA in 1217 African Americans from 2 North American cohort studies: 590 subjects from the Johnston County Osteoarthritis Project and 627 subjects from the Osteoarthritis Initiative. Analyses were conducted in each cohort separately and combined in an inverse variance fixed effects metaanalysis, which were then included in pathway analyses. We additionally tested 12 single-nucleotide polymorphisms robustly associated with OA in European white populations for association in African Americans.
Results. We identified a genome-wide significant variant in LINC01006 (minor allele frequency 12%; p = 4.11 × 10−9) that is less common in European white populations (minor allele frequency < 3%). Five other independent loci reached suggestive significance (p < 1 × 10−6). In pathway analyses, dorsal/ventral neural tube patterning and iron ion transport pathways were significantly associated with knee OA in African Americans (false discovery rate < 0.05). We found no evidence that previously reported OA susceptibility variants in European whites were associated with knee OA in African Americans.
Conclusion. These results highlight differences in the genetic architecture of knee OA between African American and European whites. This finding underscores the need to include more diverse populations in OA genetics studies.
Footnotes
The Genetic Components of Knee Osteoarthritis project was supported by the American Recovery and Reinvestment Act through grant no. RC2-AR-058950 from the US National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)/National Institutes of Health (NIH). The Osteoarthritis Initiative is a public-private partnership composed of 5 contracts (N01-AR-2-2258, N01-AR-2-2259, N01-AR-2-2260, N01-AR-2-2261, N01-AR-2-2262) funded by the NIH. The Johnston County Osteoarthritis Project is supported in part by S043, S1734, and S3486 from the US Centers for Disease Control/Association of Schools of Public Health; 5-P60-AR30701 and 5-P60-AR49465-03 from NIAMS/NIH, and Algynomics Inc. Partial analysis support was provided by P30 DK072488. MSY was supported by the US National Institute on Aging (NIA)/NIH T32AG00262, Arthritis Foundation Doctoral Dissertation Award (6081), NIA/NIH T32AG023480, and Friends of Hebrew SeniorLife.
- Accepted for publication June 27, 2017.